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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS21073.1PFAM: Domain of unknown function DUF1841; KEGG: aav:Aave_3950 hypothetical protein. (144 aa)    
Predicted Functional Partners:
ACS18104.1
KEGG: dac:Daci_2180 hypothetical protein.
  
     0.742
ACS21005.1
KEGG: aav:Aave_3908 biotin synthesis protein BioC.
 
     0.720
ACS18479.1
PFAM: protein of unknown function DUF498; KEGG: aav:Aave_1236 hypothetical protein.
  
     0.711
ACS17628.1
PFAM: protein of unknown function DUF185; KEGG: rfr:Rfer_0812 hypothetical protein.
  
     0.705
ACS20745.1
PFAM: FAD linked oxidase domain protein; protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: pol:Bpro_0858 FAD linked oxidase-like.
  
     0.678
ACS20050.1
PFAM: NlpBDapX family lipoprotein; KEGG: rfr:Rfer_2096 NlpBDapX lipoprotein.
 
     0.666
ACS18319.1
KEGG: pna:Pnap_2770 membrane protein-like protein.
  
     0.663
lptE
Rare lipoprotein B; Together with LptD, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. Required for the proper assembly of LptD. Binds LPS and may serve as the LPS recognition site at the outer membrane; Belongs to the LptE lipoprotein family.
  
     0.662
ACS18966.1
PFAM: Methyltransferase type 11; KEGG: pna:Pnap_1679 methyltransferase type 11.
 
     0.646
ACS16918.1
KEGG: aav:Aave_0265 hypothetical protein.
  
     0.619
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
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