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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS21079.1PFAM: GCN5-related N-acetyltransferase; KEGG: pol:Bpro_1220 hypothetical protein. (198 aa)    
Predicted Functional Partners:
ACS21078.1
PFAM: AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: pol:Bpro_1222 ATPase associated with various cellular activities, AAA_5.
       0.748
ACS21080.1
KEGG: ajs:Ajs_3559 hypothetical protein.
       0.745
ACS20356.1
KEGG: dac:Daci_4749 L-lysine 6-monooxygenase (NADPH).
  
  
 0.617
ACS19415.1
PFAM: Negative transcriptional regulator; KEGG: vei:Veis_0716 FMN-binding negative transcriptional regulator.
 
     0.612
ACS21081.1
PFAM: surface antigen (D15); KEGG: aav:Aave_3955 surface antigen (D15).
       0.598
glmS
Glucosamine/fructose-6-phosphate aminotransferase, isomerizing; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.
 
    0.594
ACS21082.1
PFAM: protein of unknown function DUF490; KEGG: aav:Aave_3956 hypothetical protein.
       0.579
ACS21077.1
PFAM: cytochrome c class I; KEGG: pol:Bpro_1223 cytochrome c, class I.
       0.567
rnc
Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
  
    0.562
ACS22640.1
PFAM: Negative transcriptional regulator; KEGG: lch:Lcho_4337 FMN-binding negative transcriptional regulator.
 
     0.541
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
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