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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS21081.1PFAM: surface antigen (D15); KEGG: aav:Aave_3955 surface antigen (D15). (643 aa)    
Predicted Functional Partners:
ACS21082.1
PFAM: protein of unknown function DUF490; KEGG: aav:Aave_3956 hypothetical protein.
 
 
 0.997
ACS21080.1
KEGG: ajs:Ajs_3559 hypothetical protein.
       0.729
ACS18028.1
PFAM: HemY domain protein; KEGG: aav:Aave_1996 HemY domain-containing protein.
 
     0.679
lptD
Organic solvent tolerance protein; Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane.
  
   
 0.643
ACS20377.1
PFAM: Sporulation domain protein; KEGG: dia:Dtpsy_2228 sporulation domain protein.
  
     0.598
ACS21079.1
PFAM: GCN5-related N-acetyltransferase; KEGG: pol:Bpro_1220 hypothetical protein.
       0.598
ACS19715.1
KEGG: vei:Veis_3631 hypothetical protein.
 
     0.571
ACS20740.1
KEGG: aav:Aave_3642 hypothetical protein.
 
     0.557
ACS21078.1
PFAM: AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: pol:Bpro_1222 ATPase associated with various cellular activities, AAA_5.
       0.552
ACS21083.1
Hypothetical protein.
       0.535
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
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