Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ACS21082.1PFAM: protein of unknown function DUF490; KEGG: aav:Aave_3956 hypothetical protein. (1359 aa)    
Predicted Functional Partners:
ACS21081.1
PFAM: surface antigen (D15); KEGG: aav:Aave_3955 surface antigen (D15).
 
 
 0.998
ACS19715.1
KEGG: vei:Veis_3631 hypothetical protein.
 
    0.768
ACS18028.1
PFAM: HemY domain protein; KEGG: aav:Aave_1996 HemY domain-containing protein.
 
     0.756
ACS20740.1
KEGG: aav:Aave_3642 hypothetical protein.
 
     0.730
ACS21080.1
KEGG: ajs:Ajs_3559 hypothetical protein.
       0.728
ACS20954.1
KEGG: pol:Bpro_1295 putative lipoprotein.
  
   
 0.720
lptD
Organic solvent tolerance protein; Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane.
 
   
 0.696
ACS17253.1
KEGG: aav:Aave_4529 hypothetical protein.
 
     0.694
ACS21761.1
KEGG: rfr:Rfer_0366 hypothetical protein.
  
   
 0.692
ACS17515.1
PFAM: ProQ activator of osmoprotectant transporter ProP; KEGG: pol:Bpro_1033 hypothetical protein.
 
     0.687
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
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