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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
frc-2formyl-CoA transferase; Involved in the catabolism of oxalate and in the adapatation to low pH via the induction of the oxalate-dependent acid tolerance response (ATR). Catalyzes the transfer of the CoA moiety from formyl- CoA to oxalate; Belongs to the CoA-transferase III family. Frc subfamily. (423 aa)    
Predicted Functional Partners:
ACS21098.1
TIGRFAM: oxalyl-CoA decarboxylase; PFAM: thiamine pyrophosphate protein TPP binding domain protein; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein domain protein TPP-binding; KEGG: pol:Bpro_2800 putative oxalyl-CoA decarboxylase; Belongs to the TPP enzyme family.
 
 
 0.961
ACS21086.1
PFAM: major facilitator superfamily MFS_1; KEGG: mms:mma_3508 major facilitator superfamily oxalate/formate antiporter.
  
     0.714
ACS22149.1
PFAM: major facilitator superfamily MFS_1; KEGG: mms:mma_3473 major facilitator superfamily oxalate/formate antiporter.
  
     0.708
ACS21096.1
KEGG: pol:Bpro_2802 putative PAS/PAC sensor protein; TIGRFAM: PAS sensor protein; PFAM: PAS fold domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein.
 
     0.677
ACS18864.1
PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: pna:Pnap_1900 L-carnitine dehydratase/bile acid-inducible protein F; Belongs to the CoA-transferase III family.
  
     0.582
frc
formyl-CoA transferase; Involved in the catabolism of oxalate and in the adapatation to low pH via the induction of the oxalate-dependent acid tolerance response (ATR). Catalyzes the transfer of the CoA moiety from formyl- CoA to oxalate; Belongs to the CoA-transferase III family. Frc subfamily.
 
    
0.578
ACS21099.1
Hypothetical protein.
       0.569
ACS21100.1
Putative transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding; KEGG: pol:Bpro_2799 cyclic nucleotide-binding domain (cNMP-BD) protein.
 
     0.511
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
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