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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS21110.1KEGG: afw:Anae109_1067 hypothetical protein. (116 aa)    
Predicted Functional Partners:
ACS18380.1
KEGG: cja:CJA_0606 hypothetical protein.
 
   
 0.717
ACS21109.1
PFAM: transposase IS4 family protein; KEGG: reu:Reut_C5936 IS4 family transposase.
       0.476
ACS20251.1
PFAM: protein of unknown function DUF1486; KEGG: sal:Sala_1640 hypothetical protein.
  
     0.469
ACS22076.1
KEGG: cja:CJA_3592 hypothetical protein.
  
     0.400
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
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