close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS21188.1Sigma 54 interacting domain protein; KEGG: hch:HCH_06867 hypothetical protein. (1228 aa)    
Predicted Functional Partners:
ACS21187.1
KEGG: cti:pRALTA_0050 hypothetical protein.
       0.803
ACS21189.1
KEGG: cti:pRALTA_0048 hypothetical protein.
       0.803
ACS18449.1
PFAM: Peptidase M23; Peptidoglycan-binding LysM; SMART: Peptidoglycan-binding LysM; KEGG: pol:Bpro_3059 peptidase M23B.
  
   0.786
ACS21190.1
KEGG: cti:pRALTA_0047 hypothetical protein.
       0.784
ACS18660.1
PFAM: Peptidase M23; KEGG: aav:Aave_1416 peptidase M23B.
  
   0.782
ACS21185.1
PFAM: SMC domain protein; KEGG: pna:Pnap_1663 hypothetical protein.
       0.432
ACS21186.1
PFAM: metallophosphoesterase; KEGG: pna:Pnap_1662 metallophosphoesterase.
       0.432
ACS21191.1
PFAM: SNF2-related protein; restriction endonuclease; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein; KEGG: bpt:Bpet0222 helicase, putative.
       0.417
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
Server load: low (34%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.