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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS21190.1KEGG: cti:pRALTA_0047 hypothetical protein. (480 aa)    
Predicted Functional Partners:
ACS21187.1
KEGG: cti:pRALTA_0050 hypothetical protein.
       0.784
ACS21188.1
Sigma 54 interacting domain protein; KEGG: hch:HCH_06867 hypothetical protein.
       0.784
ACS21189.1
KEGG: cti:pRALTA_0048 hypothetical protein.
       0.784
ACS21185.1
PFAM: SMC domain protein; KEGG: pna:Pnap_1663 hypothetical protein.
       0.422
ACS21186.1
PFAM: metallophosphoesterase; KEGG: pna:Pnap_1662 metallophosphoesterase.
       0.422
ACS21191.1
PFAM: SNF2-related protein; restriction endonuclease; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein; KEGG: bpt:Bpet0222 helicase, putative.
       0.408
ACS21192.1
KEGG: cti:RALTA_A0828 hypothetical protein.
       0.408
ACS21193.1
KEGG: pcr:Pcryo_0954 hypothetical protein.
       0.408
ACS21194.1
Putative methyl-accepting chemotaxis sensory transducer; KEGG: pcr:Pcryo_0953 hypothetical protein.
       0.408
ACS21195.1
KEGG: aeh:Mlg_1537 hypothetical protein.
       0.408
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
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