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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS21206.1KEGG: ppw:PputW619_4382 type I secretion system ATPase; TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase. (730 aa)    
Predicted Functional Partners:
ACS21205.1
TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; KEGG: ppw:PputW619_4383 HlyD family type I secretion membrane fusion protein.
 
 0.989
ACS21207.1
TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: ppf:Pput_0829 TolC family type I secretion outer membrane protein.
  
 0.965
ACS21067.1
TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; KEGG: dac:Daci_2078 HlyD family type I secretion membrane fusion protein.
 
 0.951
ACS22529.1
TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; KEGG: lch:Lcho_1760 HlyD family type I secretion membrane fusion protein.
 
 0.932
ACS21068.1
PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: dac:Daci_2079 ABC transporter related.
  
  
 
0.923
ACS21208.1
KEGG: cja:CJA_1396 putative hemolysin; TIGRFAM: outer membrane adhesin like proteiin; PFAM: von Willebrand factor type A; Cadherin; coagulase; SMART: von Willebrand factor type A; Cadherin.
 
  
 0.850
ACS20339.1
TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: pol:Bpro_1664 type I secretion outer membrane protein, TolC.
 
  
 0.792
ACS20203.1
PFAM: Siderophore-interacting protein; FAD-binding 9 siderophore-interacting domain protein; KEGG: mms:mma_1846 iron utilization protein.
   
   0.774
msbA
Lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation.
 
 
 
0.689
ACS20110.1
PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: pol:Bpro_3238 ABC transporter related.
 
 
 
0.674
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
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