| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| ACS21236.1 | ACS21238.1 | Vapar_4631 | Vapar_4633 | Transcriptional regulator, Fis family; PFAM: helix-turn-helix Fis-type; KEGG: pol:Bpro_1131 DNA-binding protein fis; Belongs to the transcriptional regulatory Fis family. | KEGG: pna:Pnap_3361 hypothetical protein. | 0.615 |
| ACS21236.1 | ACS21903.1 | Vapar_4631 | Vapar_5301 | Transcriptional regulator, Fis family; PFAM: helix-turn-helix Fis-type; KEGG: pol:Bpro_1131 DNA-binding protein fis; Belongs to the transcriptional regulatory Fis family. | Conserved hypothetical protein; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | 0.557 |
| ACS21236.1 | dusB | Vapar_4631 | Vapar_4632 | Transcriptional regulator, Fis family; PFAM: helix-turn-helix Fis-type; KEGG: pol:Bpro_1131 DNA-binding protein fis; Belongs to the transcriptional regulatory Fis family. | TIM-barrel protein, nifR3 family; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the Dus family. DusB subfamily. | 0.984 |
| ACS21236.1 | purH | Vapar_4631 | Vapar_4630 | Transcriptional regulator, Fis family; PFAM: helix-turn-helix Fis-type; KEGG: pol:Bpro_1131 DNA-binding protein fis; Belongs to the transcriptional regulatory Fis family. | KEGG: pna:Pnap_3358 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; TIGRFAM: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; PFAM: AICARFT/IMPCHase bienzyme formylation region; MGS domain protein; SMART: AICARFT/IMPCHase bienzyme formylation region. | 0.832 |
| ACS21238.1 | ACS21236.1 | Vapar_4633 | Vapar_4631 | KEGG: pna:Pnap_3361 hypothetical protein. | Transcriptional regulator, Fis family; PFAM: helix-turn-helix Fis-type; KEGG: pol:Bpro_1131 DNA-binding protein fis; Belongs to the transcriptional regulatory Fis family. | 0.615 |
| ACS21238.1 | dusB | Vapar_4633 | Vapar_4632 | KEGG: pna:Pnap_3361 hypothetical protein. | TIM-barrel protein, nifR3 family; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the Dus family. DusB subfamily. | 0.678 |
| ACS21238.1 | purH | Vapar_4633 | Vapar_4630 | KEGG: pna:Pnap_3361 hypothetical protein. | KEGG: pna:Pnap_3358 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; TIGRFAM: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; PFAM: AICARFT/IMPCHase bienzyme formylation region; MGS domain protein; SMART: AICARFT/IMPCHase bienzyme formylation region. | 0.562 |
| ACS21903.1 | ACS21236.1 | Vapar_5301 | Vapar_4631 | Conserved hypothetical protein; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | Transcriptional regulator, Fis family; PFAM: helix-turn-helix Fis-type; KEGG: pol:Bpro_1131 DNA-binding protein fis; Belongs to the transcriptional regulatory Fis family. | 0.557 |
| ACS21903.1 | dusB | Vapar_5301 | Vapar_4632 | Conserved hypothetical protein; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | TIM-barrel protein, nifR3 family; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the Dus family. DusB subfamily. | 0.838 |
| ACS21903.1 | rimM | Vapar_5301 | Vapar_1474 | Conserved hypothetical protein; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | 16S rRNA processing protein RimM; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family. | 0.821 |
| ACS21903.1 | rplU | Vapar_5301 | Vapar_4218 | Conserved hypothetical protein; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.864 |
| ACS21903.1 | rpsP | Vapar_5301 | Vapar_1473 | Conserved hypothetical protein; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | TIGRFAM: ribosomal protein S16; PFAM: ribosomal protein S16; KEGG: vei:Veis_3939 ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family. | 0.877 |
| ACS21903.1 | rpsU | Vapar_5301 | Vapar_3540 | Conserved hypothetical protein; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | TIGRFAM: ribosomal protein S21; PFAM: ribosomal protein S21; KEGG: dia:Dtpsy_2347 ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family. | 0.862 |
| ACS21903.1 | trmD | Vapar_5301 | Vapar_1475 | Conserved hypothetical protein; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | tRNA (guanine-N1)-methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family. | 0.774 |
| dusB | ACS21236.1 | Vapar_4632 | Vapar_4631 | TIM-barrel protein, nifR3 family; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the Dus family. DusB subfamily. | Transcriptional regulator, Fis family; PFAM: helix-turn-helix Fis-type; KEGG: pol:Bpro_1131 DNA-binding protein fis; Belongs to the transcriptional regulatory Fis family. | 0.984 |
| dusB | ACS21238.1 | Vapar_4632 | Vapar_4633 | TIM-barrel protein, nifR3 family; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the Dus family. DusB subfamily. | KEGG: pna:Pnap_3361 hypothetical protein. | 0.678 |
| dusB | ACS21903.1 | Vapar_4632 | Vapar_5301 | TIM-barrel protein, nifR3 family; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the Dus family. DusB subfamily. | Conserved hypothetical protein; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | 0.838 |
| dusB | panC | Vapar_4632 | Vapar_4094 | TIM-barrel protein, nifR3 family; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the Dus family. DusB subfamily. | Pantoate/beta-alanine ligase; Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate. Belongs to the pantothenate synthetase family. | 0.633 |
| dusB | purH | Vapar_4632 | Vapar_4630 | TIM-barrel protein, nifR3 family; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the Dus family. DusB subfamily. | KEGG: pna:Pnap_3358 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; TIGRFAM: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; PFAM: AICARFT/IMPCHase bienzyme formylation region; MGS domain protein; SMART: AICARFT/IMPCHase bienzyme formylation region. | 0.801 |
| dusB | rimM | Vapar_4632 | Vapar_1474 | TIM-barrel protein, nifR3 family; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the Dus family. DusB subfamily. | 16S rRNA processing protein RimM; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family. | 0.743 |
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