close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS21318.1PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bpt:Bpet2158 acyl-CoA transferase/carnitine dehydratase; Belongs to the CoA-transferase III family. (408 aa)    
Predicted Functional Partners:
ACS21317.1
PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: bpt:Bpet2157 acyl-CoA dehydrogenase.
 
 
 0.831
ACS21316.1
PFAM: acylphosphatase; KEGG: ajs:Ajs_4152 acylphosphatase.
       0.752
ACS21320.1
PFAM: Cupin 2 conserved barrel domain protein; protein of unknown function DUF861 cupin_3; KEGG: cti:RALTA_A2099 conserved hypothetical protein, RmlC-like cupin domain.
 
     0.526
ACS21315.1
PFAM: pyruvate carboxyltransferase; KEGG: dac:Daci_5964 pyruvate carboxyltransferase.
  
 
  0.504
ACS21319.1
PFAM: conserved hypothetical protein; KEGG: reu:Reut_B4520 hypothetical protein.
  
    0.504
ACS21312.1
PFAM: DSBA oxidoreductase; KEGG: pna:Pnap_0479 DsbA oxidoreductase.
       0.474
ACS21313.1
PFAM: protein of unknown function DUF1289; KEGG: bxe:Bxe_A4272 hypothetical protein.
       0.474
ACS21314.1
PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: aav:Aave_4348 YbaK/prolyl-tRNA synthetase associated region.
       0.474
ACS21321.1
PFAM: regulatory protein IclR; Transcriptional regulator IclR; SMART: regulatory protein IclR; KEGG: bpt:Bpet2156 IclR family transcriptional regulator.
       0.462
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
Server load: medium (54%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.