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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS21379.1PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: har:HEAR0058 putative TonB-dependent receptor protein. (760 aa)    
Predicted Functional Partners:
ACS19736.1
TIGRFAM: protein TolA; PFAM: Tol-Pal system TolA; KEGG: dia:Dtpsy_2263 protein TolA.
 
 
 0.768
ACS17587.1
TIGRFAM: TonB family protein; KEGG: pol:Bpro_1088 TonB-like.
  
 
 0.737
ACS18287.1
KEGG: dia:Dtpsy_1044 hypothetical protein.
  
 
 0.737
ACS18457.1
TIGRFAM: TonB family protein; KEGG: aav:Aave_3311 TonB family protein.
  
 
 0.737
ACS20538.1
KEGG: dia:Dtpsy_1044 hypothetical protein.
  
 
 0.737
ACS21378.1
PFAM: protein of unknown function DUF461; nuclear export factor GLE1; KEGG: smd:Smed_1186 protein of unknown function DUF461.
  
    0.710
ACS18810.1
KEGG: pol:Bpro_2620 hypothetical protein.
  
 
 0.694
ACS21392.1
PFAM: protein of unknown function DUF399; KEGG: pol:Bpro_0441 hypothetical protein.
 
  
 0.623
ACS21395.1
KEGG: aav:Aave_4502 putative signal peptide protein.
  
 
 
 0.613
ACS22425.1
TIGRFAM: outer membrane autotransporter barrel domain protein; autotransporter-associated beta strand repeat protein; PFAM: Autotransporter beta- domain protein; KEGG: bur:Bcep18194_B0758 outer membrane autotransporter barrel.
    
 
 0.605
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
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