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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS21399.1PFAM: regulatory protein TetR; KEGG: rfr:Rfer_3897 TetR family transcriptional regulator. (232 aa)    
Predicted Functional Partners:
ACS21400.1
PFAM: Extracellular ligand-binding receptor; KEGG: vei:Veis_1685 extracellular ligand-binding receptor.
 
     0.723
ACS21397.1
PFAM: Carbamoyl-phosphate synthase L chain ATP-binding; biotin carboxylase domain protein; carboxyl transferase; biotin/lipoyl attachment domain-containing protein; Carbamoyl-phosphate synthetase large chain domain protein; KEGG: dac:Daci_1073 carbamoyl-phosphate synthase L chain ATP-binding.
 
 
 
 0.673
ACS21398.1
PFAM: AMP-dependent synthetase and ligase; KEGG: rfr:Rfer_3898 AMP-dependent synthetase and ligase.
 
   
 0.618
ACS20213.1
PFAM: ferredoxin; FAD-binding 9 siderophore-interacting domain protein; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; cytochrome P450; KEGG: reh:H16_B1279 two domain protein: cytochrome P450.
 
  
 0.486
ACS21963.1
PFAM: regulatory protein TetR; KEGG: pol:Bpro_3444 transcriptional regulator, TetR family.
  
     0.421
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
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