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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS21419.1TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: pol:Bpro_0395 twitching motility protein. (378 aa)    
Predicted Functional Partners:
ACS21418.1
TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: dia:Dtpsy_0412 twitching motility protein.
 
  
0.827
ACS17791.1
TIGRFAM: type IV pilus assembly protein PilM; KEGG: pol:Bpro_0781 type IV pilus assembly protein PilM.
 
  
 0.825
ACS20835.1
Prepilin peptidase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
  
   
 0.813
ACS20834.1
PFAM: type II secretion system protein; KEGG: ajs:Ajs_0804 type II secretion system protein.
 
   
 0.810
ACS17722.1
TIGRFAM: general secretion pathway protein F; PFAM: type II secretion system protein; KEGG: dia:Dtpsy_0642 general secretion pathway protein F.
 
   
 0.797
ACS17795.1
TIGRFAM: type IV pilus secretin PilQ; PFAM: type II and III secretion system protein; Secretin/TonB short domain; NolW domain protein; KEGG: rfr:Rfer_2923 type II and III secretion system protein.
  
   
 0.749
ACS17793.1
PFAM: Pilus assembly protein PilO; KEGG: pol:Bpro_0783 pilus assembly protein, PilO.
 
  
 0.713
ACS17792.1
PFAM: Fimbrial assembly family protein; KEGG: pol:Bpro_0782 fimbrial assembly.
  
  
 0.674
ACS19721.1
KEGG: dac:Daci_5198 fimbrial protein pilin.
  
   
 0.666
ACS21420.1
2-hydroxy-3-oxopropionate reductase; PFAM: 6-phosphogluconate dehydrogenase NAD-binding; NADP oxidoreductase coenzyme F420-dependent; KEGG: dia:Dtpsy_0409 3-hydroxyisobutyrate dehydrogenase.
       0.665
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
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