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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS21489.1PFAM: Citrate transporter; KEGG: rso:RS01905 hypothetical protein. (378 aa)    
Predicted Functional Partners:
ACS21488.1
PFAM: AMP-dependent synthetase and ligase; KEGG: dac:Daci_1405 AMP-dependent synthetase and ligase.
       0.791
ACS21490.1
Transcriptional regulator, AraC family; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: pol:Bpro_0312 transcriptional regulator, AraC family.
     
 0.670
guaA
GMP synthase, large subunit; Catalyzes the synthesis of GMP from XMP.
  
    0.513
ACS21487.1
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: spe:Spro_2354 LysR family transcriptional regulator.
       0.511
ACS21491.1
PFAM: protein of unknown function DUF6 transmembrane; KEGG: pol:Bpro_0311 protein of unknown function DUF6, transmembrane.
       0.498
ACS21486.1
PFAM: major facilitator superfamily MFS_1; KEGG: bpy:Bphyt_4077 major facilitator superfamily MFS_1.
     
 0.402
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
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