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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS21490.1Transcriptional regulator, AraC family; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: pol:Bpro_0312 transcriptional regulator, AraC family. (237 aa)    
Predicted Functional Partners:
ACS21489.1
PFAM: Citrate transporter; KEGG: rso:RS01905 hypothetical protein.
     
 0.670
ACS21491.1
PFAM: protein of unknown function DUF6 transmembrane; KEGG: pol:Bpro_0311 protein of unknown function DUF6, transmembrane.
 
   
 0.670
ACS21488.1
PFAM: AMP-dependent synthetase and ligase; KEGG: dac:Daci_1405 AMP-dependent synthetase and ligase.
     
 0.665
ACS18231.1
PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: ppg:PputGB1_0666 regulatory protein GntR HTH.
 
  
 0.569
ACS16957.1
PFAM: Silent information regulator protein Sir2; KEGG: aeh:Mlg_2040 silent information regulator protein Sir2.
  
  
 0.568
rpoD
RNA polymerase, sigma 70 subunit, RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
   
 
 0.545
ACS18450.1
Putative RNA polymerase, sigma 70 family subunit; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
   
 
 0.545
rpoH
RNA polymerase, sigma 32 subunit, RpoH; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in regulation of expression of heat shock genes.
   
 
 0.545
ACS18892.1
KEGG: hypothetical protein.
    
   0.504
ACS18893.1
TIGRFAM: flagellar basal-body rod protein FlgG; PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body rod protein; KEGG: gur:Gura_4106 flagellar basal body rod protein FlgG; Belongs to the flagella basal body rod proteins family.
    
   0.504
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
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