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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS21526.1KEGG: aav:Aave_0331 putative transmembrane protein. (210 aa)    
Predicted Functional Partners:
ACS21529.1
PFAM: conserved hypothetical protein; KEGG: aav:Aave_0328 hypothetical protein.
 
     0.828
ACS21525.1
Beta-lactamase; PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; KEGG: pol:Bpro_0250 Penicillin-binding protein 6. Serine peptidase. MEROPS family S11; Belongs to the peptidase S11 family.
 
     0.793
ACS21527.1
KEGG: dac:Daci_0383 ferredoxin-like protein.
 
     0.703
ACS21528.1
PFAM: VanZ family protein; KEGG: rfr:Rfer_3803 VanZ like protein.
       0.694
ACS17089.1
TIGRFAM: glutamate/cysteine ligase; PFAM: glutamate--cysteine ligase GshA; KEGG: dia:Dtpsy_3259 glutamate/cysteine ligase.
  
     0.606
trpS
tryptophanyl-tRNA synthetase; Catalyzes the attachment of tryptophan to tRNA(Trp). Belongs to the class-I aminoacyl-tRNA synthetase family.
  
    0.531
ACS18104.1
KEGG: dac:Daci_2180 hypothetical protein.
 
     0.519
ACS21334.1
KEGG: pol:Bpro_4182 hypothetical protein.
 
    0.464
coq7
Putative ubiquinone biosynthesis protein; Catalyzes the hydroxylation of 2-nonaprenyl-3-methyl-6- methoxy-1,4-benzoquinol during ubiquinone biosynthesis.
 
     0.454
ACS21681.1
PFAM: phospholipid/glycerol acyltransferase; major facilitator superfamily MFS_1; SMART: phospholipid/glycerol acyltransferase; KEGG: dia:Dtpsy_3151 phospholipid/glycerol acyltransferase.
  
     0.440
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
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