Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ACS21545.1Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: rpa:RPA2140 AraC family transcriptional regulator. (276 aa)    
Predicted Functional Partners:
ACS21544.1
PFAM: inner-membrane translocator; KEGG: rfr:Rfer_3499 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
       0.736
ACS22384.1
PFAM: amidohydrolase 2; KEGG: pol:Bpro_0242 amidohydrolase 2.
  
     0.654
ACS17735.1
KEGG: bmj:BMULJ_00432 hypothetical protein; Belongs to the 'phage' integrase family.
  
    0.616
ACS20242.1
KEGG: aav:Aave_0431 hypothetical protein.
  
     0.561
ACS21619.1
Transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: dac:Daci_2336 LuxR family transcriptional regulator.
  
    0.553
ACS18983.1
KEGG: bja:bll2395 hypothetical protein.
 
     0.550
ACS21542.1
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rfr:Rfer_3501 ABC transporter related.
       0.523
ACS21543.1
PFAM: inner-membrane translocator; KEGG: rfr:Rfer_3500 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
       0.523
ACS21916.1
Putative membrane protein involved in toxin uptake; KEGG: dac:Daci_2082 hypothetical protein.
  
     0.523
ACS21383.1
KEGG: sbn:Sbal195_2514 hypothetical protein.
  
     0.508
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
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