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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS21570.1PFAM: regulatory protein MarR; transcriptional regulator PadR family protein; SMART: regulatory protein MarR; KEGG: pol:Bpro_0623 transcriptional regulator, MarR family. (153 aa)    
Predicted Functional Partners:
ACS21571.1
PFAM: OsmC family protein; KEGG: aav:Aave_4272 OsmC family protein.
  
 0.943
ACS21039.1
PFAM: OsmC family protein; KEGG: bur:Bcep18194_A4882 OsmC-like protein.
 
  
 0.656
ACS22034.1
PFAM: OsmC family protein; KEGG: bpy:Bphyt_2340 OsmC family protein.
 
  
 0.633
ACS21569.1
TIGRFAM: ABC-2 type transporter, NodJ family; PFAM: ABC-2 type transporter; KEGG: rfr:Rfer_3557 ABC transporter.
       0.524
nodI
ABC transporter related; Part of the ABC transporter complex NodIJ involved in the export of the nodulation factors (Nod factors), the bacterial signal molecules that induce symbiosis and subsequent nodulation induction. Nod factors are LCO (lipo-chitin oligosaccharide), a modified beta-1,4- linked N-acetylglucosamine oligosaccharide. This subunit is responsible for energy coupling to the transport system.
     
 0.521
ACS18385.1
PFAM: Substrate-binding region of ABC-type glycine betaine transport system; binding-protein-dependent transport systems inner membrane component; KEGG: rso:RSc2516 putative lipoprotein transmembrane.
  
  
 0.474
ACS21567.1
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: pol:Bpro_0644 transcriptional regulator, LysR family.
  
  
 0.400
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
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