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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS21617.1PFAM: conserved hypothetical protein; KEGG: vei:Veis_0488 hypothetical protein. (324 aa)    
Predicted Functional Partners:
ACS17901.1
PFAM: protein of unknown function DUF1468; KEGG: dia:Dtpsy_2746 protein of unknown function DUF1468.
 
    0.734
ACS22937.1
PFAM: protein of unknown function DUF1468; KEGG: aav:Aave_1069 hypothetical protein.
 
    0.716
ACS16981.1
PFAM: protein of unknown function DUF1468; KEGG: aav:Aave_1069 hypothetical protein.
 
    0.710
ACS18699.1
TIGRFAM: phosphonate ABC transporter, periplasmic phosphonate-binding protein; SMART: extracellular solute-binding protein family 3; KEGG: lch:Lcho_1723 phosphonate ABC transporter, periplasmic phosphonate-binding protein.
   
    0.508
ACS17902.1
PFAM: protein of unknown function DUF112 transmembrane; KEGG: ajs:Ajs_3411 hypothetical protein.
 
    0.471
ACS16980.1
PFAM: protein of unknown function DUF112 transmembrane; KEGG: pna:Pnap_3237 hypothetical protein.
 
    0.465
ACS22938.1
PFAM: protein of unknown function DUF112 transmembrane; KEGG: vei:Veis_4018 hypothetical protein.
 
    0.461
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
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