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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS21679.1KEGG: dia:Dtpsy_3147 hypothetical protein. (167 aa)    
Predicted Functional Partners:
ACS21678.1
KEGG: dia:Dtpsy_3146 hypothetical protein.
       0.861
ACS21680.1
PFAM: YiaAB two helix domain protein; KEGG: ajs:Ajs_3875 hypothetical protein.
       0.815
ACS21677.1
KEGG: aav:Aave_4487 hypothetical protein.
       0.735
ACS21681.1
PFAM: phospholipid/glycerol acyltransferase; major facilitator superfamily MFS_1; SMART: phospholipid/glycerol acyltransferase; KEGG: dia:Dtpsy_3151 phospholipid/glycerol acyltransferase.
       0.564
ACS21682.1
KEGG: vei:Veis_1658 hypothetical protein.
       0.491
ACS21676.1
KEGG: bph:Bphy_5538 hypothetical protein.
       0.433
ACS21683.1
SMART: helix-turn-helix domain protein; KEGG: pna:Pnap_0307 helix-turn-helix domain-containing protein.
       0.411
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
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