Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ACS21685.1PFAM: Uracil-DNA glycosylase superfamily; KEGG: aav:Aave_4571 phage SPO1 DNA polymerase-related protein. (260 aa)    
Predicted Functional Partners:
ACS19428.1
TIGRFAM: phage SPO1 DNA polymerase-related protein; PFAM: Uracil-DNA glycosylase superfamily; KEGG: nmu:Nmul_A1286 phage SPO1 DNA polymerase-related protein.
  
  
 0.972
ACS21686.1
TIGRFAM: ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase; KEGG: dia:Dtpsy_3290 ribosomal-protein-alanine acetyltransferase.
  
    0.868
ACS21687.1
PFAM: peptidase M22 glycoprotease; KEGG: ajs:Ajs_3940 peptidase M22, glycoprotease.
  
    0.859
gpmA
Phosphoglycerate mutase 1 family; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate; Belongs to the phosphoglycerate mutase family. BPG- dependent PGAM subfamily.
  
    0.737
pyrF
KEGG: pna:Pnap_3843 orotidine 5'-phosphate decarboxylase; TIGRFAM: orotidine 5'-phosphate decarboxylase; PFAM: Orotidine 5'-phosphate decarboxylase; Belongs to the OMP decarboxylase family. Type 2 subfamily.
  
    0.734
ACS17042.1
Single-strand binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism.
   
 
 0.671
ACS21688.1
PFAM: protein of unknown function DUF6 transmembrane; KEGG: rfr:Rfer_0190 hypothetical protein.
       0.615
ACS21691.1
KEGG: rfr:Rfer_0191 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; TIGRFAM: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; PFAM: peptidase S13 D-Ala-D-Ala carboxypeptidase C.
       0.556
ACS17945.1
PFAM: NAD-dependent epimerase/dehydratase; KEGG: aav:Aave_1978 NAD-dependent epimerase/dehydratase.
 
     0.532
ACS18898.1
TIGRFAM: flagellar basal-body rod protein FlgC; PFAM: protein of unknown function DUF1078 domain protein; KEGG: hch:HCH_04080 flagellar basal-body rod protein FlgC.
    
   0.458
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
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