close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS21688.1PFAM: protein of unknown function DUF6 transmembrane; KEGG: rfr:Rfer_0190 hypothetical protein. (338 aa)    
Predicted Functional Partners:
ACS21687.1
PFAM: peptidase M22 glycoprotease; KEGG: ajs:Ajs_3940 peptidase M22, glycoprotease.
 
    0.828
ACS21686.1
TIGRFAM: ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase; KEGG: dia:Dtpsy_3290 ribosomal-protein-alanine acetyltransferase.
       0.662
ACS21685.1
PFAM: Uracil-DNA glycosylase superfamily; KEGG: aav:Aave_4571 phage SPO1 DNA polymerase-related protein.
       0.609
ACS17735.1
KEGG: bmj:BMULJ_00432 hypothetical protein; Belongs to the 'phage' integrase family.
  
     0.607
ACS21689.1
Transcriptional regulator, DeoR family; PFAM: regulatory protein DeoR; Helix-turn-helix type 11 domain protein; SMART: regulatory protein DeoR; KEGG: bph:Bphy_3264 DeoR family transcriptional regulator.
       0.572
ACS17923.1
KEGG: bja:bll0558 hypothetical protein.
  
     0.550
pyrF
KEGG: pna:Pnap_3843 orotidine 5'-phosphate decarboxylase; TIGRFAM: orotidine 5'-phosphate decarboxylase; PFAM: Orotidine 5'-phosphate decarboxylase; Belongs to the OMP decarboxylase family. Type 2 subfamily.
       0.531
ACS17749.1
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rde:RD1_1060 iron ABC transporter, permease protein, putative.
  
    0.496
ACS19987.1
PFAM: acyltransferase 3; KEGG: ajs:Ajs_2806 acyltransferase 3.
 
     0.446
ACS21691.1
KEGG: rfr:Rfer_0191 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; TIGRFAM: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; PFAM: peptidase S13 D-Ala-D-Ala carboxypeptidase C.
       0.438
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
Server load: medium (56%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.