STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKM07103.1Transporter; Pfam:pfam00209 Sodium:neurotransmitter symporter family. (477 aa)    
Predicted Functional Partners:
AKM07998.1
Amino acid transporter; Pfam:pfam01235 Sodium:alanine symporter family.
 
  
 0.740
panB
3-methyl-2-oxobutanoate hydroxymethyltransferase; Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha- ketoisovalerate to form ketopantoate; Belongs to the PanB family.
       0.633
AKM07848.1
Proline:sodium symporter; Catalyzes the sodium-dependent uptake of extracellular L- proline; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
 
  
 0.624
AKM07105.1
Pfam:pfam04332 Protein of unknown function (DUF475).
       0.490
AKM07692.1
Hypothetical protein; Pfam:pfam01699 Sodium/calcium exchanger protein.
 
  
 0.469
AKM07102.1
Extensin; Pfam:pfam06904 Extensin-like protein C-terminus.
       0.442
AKM07691.1
Hypothetical protein.
  
  
 0.404
AKM07784.1
Na/dicarboxylate cotransporter-like protein; Pfam:pfam00939 Sodium:sulfate symporter transmembrane region.
  
  
 0.402
Your Current Organism:
Altererythrobacter marensis
NCBI taxonomy Id: 543877
Other names: A. marensis, Altererythrobacter marensis Seo and Lee 2010, Altererythrobacter sp. MSW-14, DSM 21428, KCTC 22370, strain MSW-14
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