STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AM2010_11Pfam:pfam06271 RDD family. (304 aa)    
Predicted Functional Partners:
AM2010_12
Pfam:pfam01944 Integral membrane protein DUF95.
 
    0.970
AM2010_13
Pfam:pfam01882 Protein of unknown function DUF58.
 
    0.970
AM2010_15
Hypothetical protein.
 
     0.935
AM2010_14
Putative regulatory protein; Pfam:pfam07726 ATPase family associated with various cellular activities (AAA).
 
    0.880
AKM08281.1
Pfam:pfam01479 S4 domain.
  
    0.789
AM2010_16
Hypothetical protein.
       0.726
AM2010_17
Pfam:pfam00800 Prephenate dehydratase.
       0.600
AM2010_18
Cytochrome C.
       0.437
AKM08716.1
Hydrolase, alpha/beta fold family protein.
  
     0.425
AKM07845.1
Pfam:pfam05656 Protein of unknown function (DUF805).
 
    0.419
Your Current Organism:
Altererythrobacter marensis
NCBI taxonomy Id: 543877
Other names: A. marensis, Altererythrobacter marensis Seo and Lee 2010, Altererythrobacter sp. MSW-14, DSM 21428, KCTC 22370, strain MSW-14
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.