STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKM06244.1Pfam:pfam00494 Squalene/phytoene synthase. (363 aa)    
Predicted Functional Partners:
AKM06247.1
Phytoene dehydrogenase (Phytoene desaturase); Pfam:pfam01593 Flavin containing amine oxidoreductase.
 
 
 0.998
AKM06890.1
Farnesyl-diphosphate synthase; Pfam:pfam00348 Polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.
  
 0.931
AKM06248.1
Pfam:pfam05834 Lycopene cyclase protein.
 
  
 0.929
AKM06788.1
Farnesyltranstransferase; Pfam:pfam00348 Polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.
  
 0.910
AKM07054.1
Hypothetical protein.
    
  0.908
AKM07652.1
Carotene hydroxylase.
 
 
 0.874
AKM06815.1
Isoprenyl transferase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
   
 
 0.821
AKM07127.1
Pfam:pfam02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
  
  
 0.817
AKM06245.1
Decarboxylase family protein; Pfam:pfam03641 Possible lysine decarboxylase; Belongs to the LOG family.
       0.804
AKM06246.1
Pfam:pfam04480 Protein of unknown function (DUF559).
       0.773
Your Current Organism:
Altererythrobacter marensis
NCBI taxonomy Id: 543877
Other names: A. marensis, Altererythrobacter marensis Seo and Lee 2010, Altererythrobacter sp. MSW-14, DSM 21428, KCTC 22370, strain MSW-14
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