STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKM06248.1Pfam:pfam05834 Lycopene cyclase protein. (393 aa)    
Predicted Functional Partners:
AKM06247.1
Phytoene dehydrogenase (Phytoene desaturase); Pfam:pfam01593 Flavin containing amine oxidoreductase.
 
 
 0.996
AKM07652.1
Carotene hydroxylase.
 
  
 0.978
AKM06244.1
Pfam:pfam00494 Squalene/phytoene synthase.
 
  
 0.929
AKM07190.1
Beta-carotene hydroxylase; Pfam:pfam00487 Fatty acid desaturase.
   
 
 0.907
AKM08219.1
Pfam:pfam01012 Electron transfer flavoprotein domain.
  
 
 0.808
AKM07425.1
Electron transfer flavoprotein-ubiquinone oxidoreductase; Accepts electrons from ETF and reduces ubiquinone.
  
 
 0.764
AKM08220.1
Electron transfer flavoprotein, alpha subunit; Pfam:pfam00766 Electron transfer flavoprotein FAD-binding domain.
  
 
 0.724
AKM08418.1
Sterol desaturase; Pfam:pfam04116 Fatty acid hydroxylase superfamily.
 
   
 0.674
AKM06245.1
Decarboxylase family protein; Pfam:pfam03641 Possible lysine decarboxylase; Belongs to the LOG family.
       0.617
AKM06249.1
Pfam:pfam06629 MltA-interacting protein MipA.
       0.609
Your Current Organism:
Altererythrobacter marensis
NCBI taxonomy Id: 543877
Other names: A. marensis, Altererythrobacter marensis Seo and Lee 2010, Altererythrobacter sp. MSW-14, DSM 21428, KCTC 22370, strain MSW-14
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