STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKM06250.1Pfam:pfam00326 Prolyl oligopeptidase family. (680 aa)    
Predicted Functional Partners:
AKM06251.1
Xaa-Pro dipeptidase; Pfam:pfam01979 Amidohydrolase family.
 
     0.660
AKM07125.1
Beta-lactamase; Pfam:pfam00144 Beta-lactamase.
  
     0.517
AKM06252.1
Pfam:pfam05960 Bacterial protein of unknown function (DUF885).
 
    0.468
AKM06491.1
Putative metal-dependent hydrolase; Pfam:pfam07969 Amidohydrolase family.
 
     0.455
AKM08404.1
Pfam:pfam04389 Peptidase family M28.
 
    0.450
AKM07765.1
TonB-dependent receptor; Pfam:pfam14905 Outer membrane protein beta-barrel family.
  
     0.442
AKM07184.1
Pfam:pfam07715 TonB-dependent Receptor Plug Domain.
  
    0.440
AKM07632.1
Membrane protein; Pfam:pfam03806 AbgT putative transporter family.
  
     0.425
Your Current Organism:
Altererythrobacter marensis
NCBI taxonomy Id: 543877
Other names: A. marensis, Altererythrobacter marensis Seo and Lee 2010, Altererythrobacter sp. MSW-14, DSM 21428, KCTC 22370, strain MSW-14
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