STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKM07701.1Transcriptional regulator. (235 aa)    
Predicted Functional Partners:
AKM07700.1
DNA-directed RNA polymerase specialized sigma subunit; Pfam:pfam08281 Sigma-70, region 4; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.958
AKM07699.1
Extracellular protease; Pfam:pfam00082 Subtilase family.
 
   
 0.905
AM2010_63
Pfam:pfam00072 Response regulator receiver domain.
 
 
 0.819
AM2010_60
RNA polymerase sigma-24 factor; Pfam:pfam04542 Sigma-70 region 2; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.773
AKM07703.1
RNA polymerase sigma factor SigJ; Pfam:pfam04542 Sigma-70 region 2; Belongs to the sigma-70 factor family.
  
 
 0.671
AKM07757.1
RNA polymerase sigma-70 factor, ECF subfamily; Pfam:pfam08281 Sigma-70, region 4; Belongs to the sigma-70 factor family. ECF subfamily.
  
 
 0.671
AKM07763.1
RNA polymerase sigma factor, sigma-70 family protein; Pfam:pfam08281 Sigma-70, region 4; Belongs to the sigma-70 factor family. ECF subfamily.
  
 
 0.671
AKM07767.1
RNA polymerase sigma-70 factor; Pfam:pfam08281 Sigma-70, region 4; Belongs to the sigma-70 factor family. ECF subfamily.
  
 
 0.671
AKM07879.1
RNA polymerase, sigma-24 subunit, ECF subfamily; Pfam:pfam08281 Sigma-70, region 4; Belongs to the sigma-70 factor family. ECF subfamily.
  
 
 0.671
AKM07936.1
RNA polymerase subunit sigma-24; Pfam:pfam08281 Sigma-70, region 4; Belongs to the sigma-70 factor family. ECF subfamily.
  
 
 0.671
Your Current Organism:
Altererythrobacter marensis
NCBI taxonomy Id: 543877
Other names: A. marensis, Altererythrobacter marensis Seo and Lee 2010, Altererythrobacter sp. MSW-14, DSM 21428, KCTC 22370, strain MSW-14
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