STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKM06272.1Carboxyl-terminal protease; Pfam:pfam03572 Peptidase family S41. (488 aa)    
Predicted Functional Partners:
AKM07736.1
Hypothetical protein.
  
   0.649
AKM06271.1
Pfam:pfam06127 Protein of unknown function (DUF962).
       0.644
AKM07944.1
Membrane protein; Pfam:pfam00593 TonB dependent receptor.
  
     0.631
AKM06273.1
YbhB and YbcL; Pfam:pfam01161 Phosphatidylethanolamine-binding protein.
 
     0.588
AKM06274.1
Hypothetical protein; Pfam:pfam02201 SWIB/MDM2 domain.
       0.486
AM2010_37
Hypothetical protein.
  
     0.449
AKM06654.1
Ankyrin-related protein; Pfam:pfam05569 BlaR1 peptidase M56.
  
     0.426
AKM07054.1
Hypothetical protein.
  
     0.408
pheT
phenylalanyl-tRNA synthetase subunit beta; Pfam:pfam03483 B3/4 domain; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
   
 
 0.402
Your Current Organism:
Altererythrobacter marensis
NCBI taxonomy Id: 543877
Other names: A. marensis, Altererythrobacter marensis Seo and Lee 2010, Altererythrobacter sp. MSW-14, DSM 21428, KCTC 22370, strain MSW-14
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