STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKM08033.1Hypothetical protein; Pfam:pfam01906 Putative heavy-metal-binding; Belongs to the UPF0145 family. (115 aa)    
Predicted Functional Partners:
AKM08032.1
Gentamicin 3'-N-acetyltransferase; Pfam:pfam00583 Acetyltransferase (GNAT) family.
       0.773
AKM08034.1
Oxidoreductase; Pfam:pfam00106 short chain dehydrogenase.
       0.752
AKM07961.1
Flagellar L-ring protein; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.
   
    0.644
flgH
Flagellar L-ring protein FlgH; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.
   
    0.644
AKM08031.1
Putative transcriptional regulatory protein; Pfam:pfam01709 Transcriptional regulator.
       0.609
AKM08035.1
Pfam:pfam10073 Uncharacterized protein conserved in bacteria (DUF2312).
       0.592
AKM08029.1
Hypothetical protein.
  
    0.476
AKM08036.1
Pfam:pfam06844 Protein of unknown function (DUF1244).
       0.459
ruvC
Crossover junction endodeoxyribonuclease RuvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group.
       0.420
Your Current Organism:
Altererythrobacter marensis
NCBI taxonomy Id: 543877
Other names: A. marensis, Altererythrobacter marensis Seo and Lee 2010, Altererythrobacter sp. MSW-14, DSM 21428, KCTC 22370, strain MSW-14
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