STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKM08060.1Cell division cycle protein; Pfam:pfam00004 ATPase family associated with various cellular activities (AAA); Belongs to the AAA ATPase family. (768 aa)    
Predicted Functional Partners:
AKM07313.1
Pfam:pfam00850 Histone deacetylase domain.
   
 0.855
AKM08690.1
ABC-type multidrug transport system ATPase component; Pfam:pfam00005 ABC transporter.
 
 
 0.848
AKM07215.1
DNA polymerase III subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]
  
 
 0.811
AKM06336.1
Glycerol kinase; Pfam:pfam00370 FGGY family of carbohydrate kinases, N-terminal domain; Belongs to the FGGY kinase family.
  
  0.759
dnaK
Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
 
 0.751
AKM08100.1
Sel1 repeat-containing protein.
   
 0.725
AKM06405.1
Pfam:pfam05036 Sporulation related domain.
   
 0.725
AKM08416.1
ABC transporter, ATP-binding protein; Pfam:pfam00005 ABC transporter.
  
     0.693
AKM07899.1
Ankyrin; Pfam:pfam12796 Ankyrin repeats (3 copies).
    
 0.679
AKM06424.1
Peptidase; Pfam:pfam14464 Prokaryotic homologs of the JAB domain.
   
 0.673
Your Current Organism:
Altererythrobacter marensis
NCBI taxonomy Id: 543877
Other names: A. marensis, Altererythrobacter marensis Seo and Lee 2010, Altererythrobacter sp. MSW-14, DSM 21428, KCTC 22370, strain MSW-14
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