STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKM08080.1Pfam:pfam13703 PepSY-associated TM helix. (376 aa)    
Predicted Functional Partners:
AKM08081.1
Pfam:pfam00593 TonB dependent receptor.
 
     0.830
AKM07951.1
Hypothetical protein; Pfam:pfam13703 PepSY-associated TM helix.
  
     0.723
AKM07935.1
Fe2+-dicitrate sensor, membrane component; Pfam:pfam04773 FecR protein.
 
     0.629
AKM07762.1
Iron dicitrate transport regulator FecR; Pfam:pfam04773 FecR protein.
 
     0.607
AKM07007.1
Pfam:pfam04773 FecR protein.
 
     0.595
AKM06353.1
Pfam:pfam00593 TonB dependent receptor.
 
  
 0.589
AKM07756.1
Pfam:pfam04773 FecR protein.
 
     0.577
AKM06368.1
Pfam:pfam04773 FecR protein.
 
     0.571
AKM07766.1
Pfam:pfam04773 FecR protein.
 
     0.566
AKM07757.1
RNA polymerase sigma-70 factor, ECF subfamily; Pfam:pfam08281 Sigma-70, region 4; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.551
Your Current Organism:
Altererythrobacter marensis
NCBI taxonomy Id: 543877
Other names: A. marensis, Altererythrobacter marensis Seo and Lee 2010, Altererythrobacter sp. MSW-14, DSM 21428, KCTC 22370, strain MSW-14
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