STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKM08199.1Pfam:pfam00593 TonB dependent receptor. (1001 aa)    
Predicted Functional Partners:
AKM08200.1
Glucan 1,4-beta-glucosidase; Pfam:pfam00933 Glycosyl hydrolase family 3 N terminal domain.
 
   
 0.774
AKM07934.1
Cyclic nucleotide-binding protein; Pfam:pfam00593 TonB dependent receptor.
  
    0.649
AKM07681.1
TonB-dependent receptor; Pfam:pfam14905 Outer membrane protein beta-barrel family.
  
    0.644
AKM08428.1
3-phytase; Pfam:pfam02333 Phytase.
 
     0.639
AKM06376.1
Pfam:pfam07277 SapC.
 
     0.632
AKM08372.1
Pfam:pfam07715 TonB-dependent Receptor Plug Domain.
  
    0.597
AKM08465.1
Hypothetical protein; Pfam:pfam07715 TonB-dependent Receptor Plug Domain.
  
     0.589
AKM07680.1
Hypothetical protein.
 
     0.588
AKM07932.1
Cyclic nucleotide-binding protein; Pfam:pfam00593 TonB dependent receptor.
  
    0.579
AKM07761.1
Pfam:pfam00593 TonB dependent receptor.
  
     0.562
Your Current Organism:
Altererythrobacter marensis
NCBI taxonomy Id: 543877
Other names: A. marensis, Altererythrobacter marensis Seo and Lee 2010, Altererythrobacter sp. MSW-14, DSM 21428, KCTC 22370, strain MSW-14
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.