STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKM06305.1Pfam:pfam03372 Endonuclease/Exonuclease/phosphatase family. (287 aa)    
Predicted Functional Partners:
AKM06307.1
Esterase, PHB depolymerase family; Pfam:pfam12695 Alpha/beta hydrolase family.
 
     0.903
AKM06306.1
Beta-glucosidase; Pfam:pfam00232 Glycosyl hydrolase family 1.
       0.787
AKM06308.1
Pfam:pfam00528 Binding-protein-dependent transport system inner membrane component.
       0.783
AKM06309.1
Pfam:pfam00528 Binding-protein-dependent transport system inner membrane component.
       0.781
AKM06310.1
Pfam:pfam01547 Bacterial extracellular solute-binding protein.
       0.778
AKM06311.1
Transcriptional regulator, LacI family; Pfam:pfam13377 Periplasmic binding protein-like domain.
       0.774
AKM06301.1
Sulfatase; Pfam:pfam00884 Sulfatase.
 
     0.685
AKM06312.1
Sugar ABC transporter ATP-binding protein; Pfam:pfam00005 ABC transporter; Belongs to the ABC transporter superfamily.
       0.681
AKM07397.1
Hypothetical protein.
    
   0.680
AKM08005.1
Isopenicillin N epimerase; Pfam:pfam00266 Aminotransferase class-V.
    
   0.680
Your Current Organism:
Altererythrobacter marensis
NCBI taxonomy Id: 543877
Other names: A. marensis, Altererythrobacter marensis Seo and Lee 2010, Altererythrobacter sp. MSW-14, DSM 21428, KCTC 22370, strain MSW-14
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