STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKM08231.1Pfam:pfam02567 Phenazine biosynthesis-like protein. (263 aa)    
Predicted Functional Partners:
pdxH
Pyridoxamine 5''''-phosphate oxidase; Catalyzes the oxidation of either pyridoxine 5'-phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP).
  
  
 0.850
AKM08232.1
Putative transporter; Pfam:pfam01545 Cation efflux family; Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family.
       0.809
AKM08234.1
DnaJ-class molecular chaperone; Pfam:pfam00226 DnaJ domain.
       0.587
AKM08236.1
Enoyl-[acyl-carrier-protein] reductase [NADH]; Pfam:pfam13561 Enoyl-(Acyl carrier protein) reductase.
       0.519
AKM08235.1
Ribonuclease BN; Pfam:pfam03631 Virulence factor BrkB.
       0.518
Your Current Organism:
Altererythrobacter marensis
NCBI taxonomy Id: 543877
Other names: A. marensis, Altererythrobacter marensis Seo and Lee 2010, Altererythrobacter sp. MSW-14, DSM 21428, KCTC 22370, strain MSW-14
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