STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKM06310.1Pfam:pfam01547 Bacterial extracellular solute-binding protein. (417 aa)    
Predicted Functional Partners:
AKM06308.1
Pfam:pfam00528 Binding-protein-dependent transport system inner membrane component.
 
 
 0.998
AKM06309.1
Pfam:pfam00528 Binding-protein-dependent transport system inner membrane component.
 
 
 0.998
AKM06312.1
Sugar ABC transporter ATP-binding protein; Pfam:pfam00005 ABC transporter; Belongs to the ABC transporter superfamily.
 
 
 0.995
AKM06311.1
Transcriptional regulator, LacI family; Pfam:pfam13377 Periplasmic binding protein-like domain.
 
  
 0.891
AKM06306.1
Beta-glucosidase; Pfam:pfam00232 Glycosyl hydrolase family 1.
 
  
 0.856
AKM06307.1
Esterase, PHB depolymerase family; Pfam:pfam12695 Alpha/beta hydrolase family.
       0.787
AKM06305.1
Pfam:pfam03372 Endonuclease/Exonuclease/phosphatase family.
       0.778
AKM06304.1
Tat pathway signal protein; Pfam:pfam10091 Putative glucoamylase.
 
     0.572
AKM06314.1
Hypothetical protein; Pfam:pfam00563 EAL domain.
       0.557
AKM06313.1
Pfam:pfam00015 Methyl-accepting chemotaxis protein (MCP) signalling domain.
       0.547
Your Current Organism:
Altererythrobacter marensis
NCBI taxonomy Id: 543877
Other names: A. marensis, Altererythrobacter marensis Seo and Lee 2010, Altererythrobacter sp. MSW-14, DSM 21428, KCTC 22370, strain MSW-14
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.