STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKM06320.1Na(+) driven multidrug efflux pump; Pfam:pfam01554 MatE. (448 aa)    
Predicted Functional Partners:
AKM07127.1
Pfam:pfam02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
  
  
 0.700
AKM06244.1
Pfam:pfam00494 Squalene/phytoene synthase.
   
 
 0.680
AKM06718.1
30S ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence.
  
    0.680
AKM07054.1
Hypothetical protein.
   
 
 0.680
AKM06319.1
CheA kinase; Pfam:pfam02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
     
 0.668
AKM06318.1
Chemotaxis protein CheW; Pfam:pfam01584 CheW-like domain.
       0.659
AKM06321.1
Isoquinoline 1-oxidoreductase (Alpha subunit)oxidoreductase protein; Pfam:pfam01799 [2Fe-2S] binding domain.
       0.563
cheB
Chemotaxis protein; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family.
       0.522
AKM06315.1
Protein-glutamate O-methyltransferase; Pfam:pfam01739 CheR methyltransferase, SAM binding domain.
       0.521
AKM06317.1
Chemotaxis protein CheY; Pfam:pfam00072 Response regulator receiver domain.
       0.487
Your Current Organism:
Altererythrobacter marensis
NCBI taxonomy Id: 543877
Other names: A. marensis, Altererythrobacter marensis Seo and Lee 2010, Altererythrobacter sp. MSW-14, DSM 21428, KCTC 22370, strain MSW-14
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