STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKM06344.1Hypothetical protein; Pfam:pfam03734 L,D-transpeptidase catalytic domain. (247 aa)    
Predicted Functional Partners:
AKM06345.1
Pfam:pfam01081 KDPG and KHG aldolase.
       0.621
edd
Phosphogluconate dehydratase; Catalyzes the dehydration of 6-phospho-D-gluconate to 2- dehydro-3-deoxy-6-phospho-D-gluconate; Belongs to the IlvD/Edd family.
       0.616
zwf
Glucose-6-phosphate 1-dehydrogenase; Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone.
       0.540
AKM06984.1
Pfam:pfam04314 Protein of unknown function (DUF461).
  
     0.474
AKM06471.1
Pfam:pfam09476 Pilus biogenesis CpaD protein (pilus_cpaD).
  
     0.451
AKM06535.1
Hypothetical protein.
  
     0.444
AKM08311.1
Thioesterase; Pfam:pfam03061 Thioesterase superfamily.
  
     0.424
AKM08347.1
Hypothetical protein; Pfam:pfam13180 PDZ domain.
 
   
 0.419
Your Current Organism:
Altererythrobacter marensis
NCBI taxonomy Id: 543877
Other names: A. marensis, Altererythrobacter marensis Seo and Lee 2010, Altererythrobacter sp. MSW-14, DSM 21428, KCTC 22370, strain MSW-14
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