STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKM06374.1Hypothetical protein. (187 aa)    
Predicted Functional Partners:
AKM06373.1
Hypothetical protein.
       0.737
AKM06375.1
Hypothetical protein; Pfam:pfam12545 Filamentous haemagglutinin family outer membrane protein.
       0.686
AKM06372.1
Hypothetical protein; Pfam:pfam13103 TonB C terminal.
       0.563
AKM06371.1
Hypothetical protein; Pfam:pfam02472 Biopolymer transport protein ExbD/TolR.
       0.558
AKM06376.1
Pfam:pfam07277 SapC.
       0.520
AKM06370.1
Pfam:pfam01618 MotA/TolQ/ExbB proton channel family.
       0.497
AKM06369.1
Hypothetical protein; Pfam:pfam08479 POTRA domain, ShlB-type.
       0.437
Your Current Organism:
Altererythrobacter marensis
NCBI taxonomy Id: 543877
Other names: A. marensis, Altererythrobacter marensis Seo and Lee 2010, Altererythrobacter sp. MSW-14, DSM 21428, KCTC 22370, strain MSW-14
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.