Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AKM06382.1Hypothetical protein. (312 aa)    
Predicted Functional Partners:
AKM08001.1
Pfam:pfam08240 Alcohol dehydrogenase GroES-like domain.
  
     0.445
AKM08000.1
Cyclase; Pfam:pfam03364 Polyketide cyclase / dehydrase and lipid transport.
  
     0.420
AKM06550.1
Methyltransferase; Pfam:pfam10017 Histidine-specific methyltransferase, SAM-dependent.
 
     0.418
AKM06385.1
Acetyltransferase; Pfam:pfam14542 GCN5-related N-acetyl-transferase.
 
     0.408
Your Current Organism:
Altererythrobacter marensis
NCBI taxonomy Id: 543877
Other names: A. marensis, Altererythrobacter marensis Seo and Lee 2010, Altererythrobacter sp. MSW-14, DSM 21428, KCTC 22370, strain MSW-14
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