STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKM06429.1Pfam:pfam09694 Bacterial protein of unknown function (Gcw_chp). (253 aa)    
Predicted Functional Partners:
AKM07253.1
Multidrug transporter; Pfam:pfam07277 SapC.
  
     0.596
AKM08372.1
Pfam:pfam07715 TonB-dependent Receptor Plug Domain.
  
     0.586
AKM08465.1
Hypothetical protein; Pfam:pfam07715 TonB-dependent Receptor Plug Domain.
  
     0.585
AKM07906.1
Membrane protein; Pfam:pfam07715 TonB-dependent Receptor Plug Domain.
  
     0.558
AKM07761.1
Pfam:pfam00593 TonB dependent receptor.
  
     0.525
AKM06376.1
Pfam:pfam07277 SapC.
  
     0.521
AKM08427.1
Pfam:pfam00593 TonB dependent receptor.
  
     0.511
AKM06427.1
Pfam:pfam03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain.
       0.474
AKM07184.1
Pfam:pfam07715 TonB-dependent Receptor Plug Domain.
  
     0.472
AKM06428.1
Putative serine/threonine protein phosphatase; Pfam:pfam00149 Calcineurin-like phosphoesterase.
       0.472
Your Current Organism:
Altererythrobacter marensis
NCBI taxonomy Id: 543877
Other names: A. marensis, Altererythrobacter marensis Seo and Lee 2010, Altererythrobacter sp. MSW-14, DSM 21428, KCTC 22370, strain MSW-14
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.