STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKM06433.1Putative bacteriophage N4 adsorption protein B; Pfam:pfam13641 Glycosyltransferase like family 2. (469 aa)    
Predicted Functional Partners:
AKM07106.1
TPR repeat-containing protein.
  
 
 0.874
AKM07049.1
Hypothetical protein.
 
 
 0.861
AKM06434.1
Hypothetical protein.
       0.809
AKM06363.1
Sulfotransferase.
  
 
 0.792
AKM07407.1
Polysaccharide deacetylase; Pfam:pfam11959 Domain of unknown function (DUF3473).
  
  
 0.777
AKM07991.1
Hypothetical protein.
  
  
 0.777
AKM06772.1
Pfam:pfam01522 Polysaccharide deacetylase.
  
  
 0.777
AKM07679.1
TPR repeat-containing protein.
  
 
 0.767
AKM06777.1
XRE family transcriptional regulator; Pfam:pfam12844 Helix-turn-helix domain.
  
   
 0.704
AKM06436.1
Hypothetical protein; Pfam:pfam09608 Putative transmembrane protein (Alph_Pro_TM).
 
     0.685
Your Current Organism:
Altererythrobacter marensis
NCBI taxonomy Id: 543877
Other names: A. marensis, Altererythrobacter marensis Seo and Lee 2010, Altererythrobacter sp. MSW-14, DSM 21428, KCTC 22370, strain MSW-14
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