STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKM06440.1ABC-type transport system permease component; Pfam:pfam02405 Permease. (370 aa)    
Predicted Functional Partners:
AKM06441.1
Iron ABC transporter ATP-binding protein; Pfam:pfam00005 ABC transporter.
 
 0.999
AKM06442.1
ABC-type transport system periplasmic component; Pfam:pfam02470 mce related protein.
 
 0.999
AKM08690.1
ABC-type multidrug transport system ATPase component; Pfam:pfam00005 ABC transporter.
 
 
 0.771
AKM06443.1
ABC transporter; Pfam:pfam03886 Protein of unknown function (DUF330).
 
  
 0.770
AKM08075.1
ABC-type transport system ATPase component; Pfam:pfam00005 ABC transporter.
 
  
  0.706
AM2010_68
Pfam:pfam03739 Predicted permease YjgP/YjgQ family.
 
  
 0.658
bamA
Outer membrane protein assembly factor BamA; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
 
   
 0.631
AKM07792.1
Pfam:pfam02472 Biopolymer transport protein ExbD/TolR.
  
  
 0.625
valS
Valine--tRNA ligase; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA- dependent manner; Belongs to the class-I aminoacyl-tRNA synthetase family. ValS type 1 subfamily.
       0.618
AKM07793.1
TolQ, tolQ protein; Pfam:pfam01618 MotA/TolQ/ExbB proton channel family.
  
   
 0.609
Your Current Organism:
Altererythrobacter marensis
NCBI taxonomy Id: 543877
Other names: A. marensis, Altererythrobacter marensis Seo and Lee 2010, Altererythrobacter sp. MSW-14, DSM 21428, KCTC 22370, strain MSW-14
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