STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKM06469.1Pilus assembly protein TadB; Pfam:pfam00482 Type II secretion system (T2SS), protein F. (323 aa)    
Predicted Functional Partners:
AKM06468.1
Pilus assembly protein TadC; Pfam:pfam00482 Type II secretion system (T2SS), protein F.
 
  
 0.994
AKM06470.1
Pilus assembly protein CpaE; Pfam:pfam13614 AAA domain.
 
  
 0.989
AKM06473.1
Pilus assembly protein CpaB; Pfam:pfam08666 SAF domain.
 
  
 0.985
AKM06472.1
Secretion system protein; Pfam:pfam00263 Bacterial type II and III secretion system protein; Belongs to the bacterial secretin family.
 
  
 0.953
AKM07525.1
Pilus assembly protein CpaF; Pfam:pfam00437 Type II/IV secretion system protein.
 
  
 0.950
AKM07671.1
Type IV secretion system protein B11, putative; Part of the Type IV secretion system. Belongs to the GSP E family.
 
  
 0.948
AKM06474.1
Peptidase; Pfam:pfam01478 Type IV leader peptidase family.
 
  
 0.937
AKM07056.1
Pfam:pfam07811 TadE-like protein.
 
  
 0.871
AKM07059.1
Dihydrolipoamide acetyltransferase; Pfam:pfam07811 TadE-like protein.
 
  
 0.871
AKM07068.1
Pfam:pfam04964 Flp/Fap pilin component.
 
  
 0.868
Your Current Organism:
Altererythrobacter marensis
NCBI taxonomy Id: 543877
Other names: A. marensis, Altererythrobacter marensis Seo and Lee 2010, Altererythrobacter sp. MSW-14, DSM 21428, KCTC 22370, strain MSW-14
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.