STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AM2010_44Hypothetical protein; Pfam:pfam00565 Staphylococcal nuclease homologue. (1625 aa)    
Predicted Functional Partners:
AM2010_43
Hypothetical protein.
       0.784
AM2010_41
Hypothetical protein.
       0.773
AM2010_42
Hypothetical protein.
       0.773
AKM07125.1
Beta-lactamase; Pfam:pfam00144 Beta-lactamase.
 
    0.734
AKM08533.1
Hypothetical protein; Pfam:pfam09925 Predicted membrane protein (DUF2157).
  
     0.702
AKM07670.1
Pfam:pfam07715 TonB-dependent Receptor Plug Domain.
 
 
 
 0.689
AKM07755.1
Pfam:pfam01618 MotA/TolQ/ExbB proton channel family.
  
 
 0.681
AKM06370.1
Pfam:pfam01618 MotA/TolQ/ExbB proton channel family.
  
 
 0.681
AKM08627.1
Pfam:pfam07715 TonB-dependent Receptor Plug Domain.
 
 
 
 0.669
AKM07754.1
Hypothetical protein; Pfam:pfam02472 Biopolymer transport protein ExbD/TolR.
  
 
 0.649
Your Current Organism:
Altererythrobacter marensis
NCBI taxonomy Id: 543877
Other names: A. marensis, Altererythrobacter marensis Seo and Lee 2010, Altererythrobacter sp. MSW-14, DSM 21428, KCTC 22370, strain MSW-14
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.