Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AM2010_45Pfam:pfam12802 MarR family. (174 aa)    
Predicted Functional Partners:
AKM08484.1
Pfam:pfam12802 MarR family.
  
     0.640
AM2010_47
Hypothetical protein; Pfam:pfam14117 Domain of unknown function (DUF4287).
 
     0.604
AM2010_46
Polyhydroxyalkanoate depolymerase; Pfam:pfam13564 DoxX-like family.
       0.540
AKM08543.1
ABC transporter permease protein; Pfam:pfam04069 Substrate binding domain of ABC-type glycine betaine transport system.
  
  
 0.502
Your Current Organism:
Altererythrobacter marensis
NCBI taxonomy Id: 543877
Other names: A. marensis, Altererythrobacter marensis Seo and Lee 2010, Altererythrobacter sp. MSW-14, DSM 21428, KCTC 22370, strain MSW-14
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