STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKM06551.1Peptidase; Pfam:pfam13650 Aspartyl protease. (236 aa)    
Predicted Functional Partners:
AKM06549.1
Hypothetical protein; Pfam:pfam03781 Sulfatase-modifying factor enzyme 1.
       0.770
AKM06550.1
Methyltransferase; Pfam:pfam10017 Histidine-specific methyltransferase, SAM-dependent.
       0.770
AKM08116.1
Putative phage protease; Pfam:pfam04586 Caudovirus prohead protease.
  
     0.528
AKM08113.1
Putative terminase large subunit; Pfam:pfam03237 Terminase-like family.
  
     0.502
AKM08114.1
Genetic exchange protein, putative; Pfam:pfam04860 Phage portal protein.
  
    0.496
AKM08117.1
Pfam:pfam05065 Phage capsid family.
  
   
 0.495
AKM06548.1
Pfam:pfam11903 Protein of unknown function (DUF3423).
       0.478
AKM08129.1
Pfam:pfam10983 Protein of unknown function (DUF2793).
  
     0.463
AKM07267.1
Putative membrane protein; Pfam:pfam09835 Uncharacterized protein conserved in bacteria (DUF2062).
  
     0.460
AKM08128.1
Hypothetical protein; Pfam:pfam13550 Putative phage tail protein.
  
   
 0.433
Your Current Organism:
Altererythrobacter marensis
NCBI taxonomy Id: 543877
Other names: A. marensis, Altererythrobacter marensis Seo and Lee 2010, Altererythrobacter sp. MSW-14, DSM 21428, KCTC 22370, strain MSW-14
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