STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKM06563.1Damage-inducible protein CinA; Pfam:pfam02464 Competence-damaged protein; Belongs to the CinA family. (171 aa)    
Predicted Functional Partners:
nadD
Putative nicotinate-nucleotide adenylyltransferase; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD).
  
 
 0.944
AKM08343.1
Nicotinate-nucleotide pyrophosphorylase; Pfam:pfam01729 Quinolinate phosphoribosyl transferase, C-terminal domain; Belongs to the NadC/ModD family.
     
 0.916
AKM07035.1
Nucleoside triphosphate hydrolase; Pfam:pfam03819 MazG nucleotide pyrophosphohydrolase domain.
  
  
  0.912
AKM08551.1
5''''-nucleotidase; Pfam:pfam02872 5'-nucleotidase, C-terminal domain; Belongs to the 5'-nucleotidase family.
  
 
  0.908
surE
Stationary phase survival protein SurE; Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates; Belongs to the SurE nucleotidase family.
    
  0.906
AKM07536.1
Pfam:pfam00293 NUDIX domain.
     
 0.903
nadE
NAD+ synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
     
 0.891
AKM06562.1
Pfam:pfam01028 Eukaryotic DNA topoisomerase I, catalytic core.
       0.778
AKM06565.1
Membrane protein; Pfam:pfam00892 EamA-like transporter family.
       0.773
AKM06561.1
Putative S-transferase; Belongs to the GST superfamily.
       0.546
Your Current Organism:
Altererythrobacter marensis
NCBI taxonomy Id: 543877
Other names: A. marensis, Altererythrobacter marensis Seo and Lee 2010, Altererythrobacter sp. MSW-14, DSM 21428, KCTC 22370, strain MSW-14
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