STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKM06569.1TspO and MBR-like protein; Pfam:pfam03073 TspO/MBR family. (183 aa)    
Predicted Functional Partners:
AKM06570.1
Hypothetical protein; Pfam:pfam04380 Membrane fusogenic activity.
       0.759
AKM06573.1
Putative dolichol monophosphate mannose synthase; Pfam:pfam00535 Glycosyl transferase family 2.
     
 0.697
AKM06571.1
DNA repair protein RecO (Recombination protein O); Pfam:pfam11967 Recombination protein O N terminal.
       0.682
leuB
3-isopropylmalate dehydrogenase; Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate.
       0.681
AKM06668.1
Deoxyribodipyrimidine photo-lyase; Pfam:pfam03441 FAD binding domain of DNA photolyase.
 
  
 0.657
AKM06568.1
Hemolysin; Pfam:pfam01728 FtsJ-like methyltransferase.
       0.583
AKM06247.1
Phytoene dehydrogenase (Phytoene desaturase); Pfam:pfam01593 Flavin containing amine oxidoreductase.
 
  
 0.553
AKM06244.1
Pfam:pfam00494 Squalene/phytoene synthase.
 
  
 0.434
AKM06567.1
Hypothetical protein.
       0.433
AKM08235.1
Ribonuclease BN; Pfam:pfam03631 Virulence factor BrkB.
  
  
 0.408
Your Current Organism:
Altererythrobacter marensis
NCBI taxonomy Id: 543877
Other names: A. marensis, Altererythrobacter marensis Seo and Lee 2010, Altererythrobacter sp. MSW-14, DSM 21428, KCTC 22370, strain MSW-14
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